[BiO BB] Orthologous upstream sequence analysis

[Joel Dudley]

What type of analysis would you like to do? Do you want to calculate  
rates of evolution? Construct a phylogeny?

- Joel
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On Oct 9, 2005, at 1:44 PM, Samantha Fox wrote:


>
> Hii...
> I am looking for various options to analyze a set of 300bp long  
> orthologous sequences from a group of phylogenetically related  
> species. Its like 5-8 promoter dna sequences per gene for around  
> 2000 genes.
>
> What can be the best ways to do this analysis, I looked at some  
> phylogenetic tools, but most have limitations like web-based, just  
> 2 sequences, etc.
>
> All your suggestions... and anyone experienced with similar  
> stuff. ... I welcome it all...
>
> Thanks.
> Samantha
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