[BiO BB] Digital Signal Processing on Genome sequences

[Iddo Friedberg]

Dan Bolser wrote:

> Debaprasad Mukherjee wrote:
>
>> Dear Friends and Colleagues,
>> I am a graduate in electrical engineering and am working in
>> bioinformatics software development and evolutionary genomics. I have
>> a strong interest in the application of Digital Signal Processing to
>> genome sequences.
>>
>> I would like to request you all to kindly give me some pointers on the
>> types of work that is being done and some recent references.
>>
>> It would be very helpful if I can have some introductory discussions
>> with somebody who is working in this field. Is there any thesis
>> available on the net? I have been searching on this for quite sometime
>> now and have read up a few basic papers.
>>
>> I am looking to increase my collection of reading material on this 
>> topic.
>
>
> This query on pubmed;
>
> http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=bioinformatics+wavelets 
>
>
> Turns up 6 references (and two reviews). I am certainly no expert, but 
> I think the idea of wavelets comes from signal processing.
>


Wavelets indeed do.

But so does anything that has to do with Information Theory-- esp. the 
use of Shannon entropy
"information content DNA sequence" turns up 600 papers

Signal to noise ratio in sequences.... quite a bit too.






>
>> Thank you very much. Eagerly awaiting your reply.
>
>
> All the best,
> Dan.
>
>> Regards,
>> Debaprasad Mukherjee
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-- 

Iddo Friedberg, Ph.D.
Burnham Institute for Medical Research
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http://ffas.ljcrf.edu/~iddo