[BiO BB] WU Blast installation

[kannaiah at bsd.uchicago.edu]

Hi Jeff,

I tried what you suggested. But didnt work. I also tried with export in front of
every variable, that didnt work either:(

-Kiran


Quoting "J.W. Bizzaro" <jeff at bioinformatics.org>:

> kannaiah at bsd.uchicago.edu wrote:
> > #!/bin/bash
> > (export BLASTDB=/biodb1/blast/ncbi/ntseq:/biodb1/blast/ncbi/pepseq;\
> > WUBLASTMAT=/apps/local/runtime/bin32/linux/wublast/matrix;\
> > WUBLASTFILTER=/apps/local/runtime/bin32/linux/wublast/filter;\
> > PATH=$PATH:/apps/local/runtime/bin32/linux/wublast/blastp)
> 
> The semicolon separates commands, so you're only exporting the first variable
> 
> BLASTDB.  The others won't appear in subsequent shells.  Try this:
> 
> #!/bin/bash
> export BLASTDB=/biodb1/blast/ncbi/ntseq:/biodb1/blast/ncbi/pepseq \
> WUBLASTMAT=/apps/local/runtime/bin32/linux/wublast/matrix \
> WUBLASTFILTER=/apps/local/runtime/bin32/linux/wublast/filter \
> PATH=$PATH:/apps/local/runtime/bin32/linux/wublast/blastp
> 
> Jeff
> -- 
> J.W. Bizzaro
> Bioinformatics Organization, Inc. (Bioinformatics.Org)
> E-mail: jeff at bioinformatics.org
> Phone:  +1 508 890 8600
> --
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
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> 
> 
> 





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