[BiO BB] Restriction sites frequencies in mouse genome

Benoit VARVENNE varvenne at genoway.com
Tue Aug 29 08:35:44 EDT 2006

Hello everybody,

Thanks to all for your ideas and suggestions. I think i'm going to consider
perl programming to calculate restriction sites frequency as softwares
mentionned in your mails (+softwares i found) don't seem to be useful for a
whole genome scale. Programming was to be avoid for this study but it seems
to be the only solution. I'm really surprised not being able to find such an
already done study.

Thanks again,

Benoît Varvenne,
Bioinformatics pearson in charge,
Genoway Lyon - France.

Le 28/08/06 11:34, « Benoit VARVENNE » <varvenne at genoway.com> a écrit :

> Dear Members,
> I am a new member of this mailing-list and i don't know if such a post will
> draw the attention of anyone here. So excuse me in advance if my subject is
> not appropriate.
> I am searching for a way to calculate restriction sites frequency in mouse
> genome (so sequences from 6 to 13bp). I have already tried to do so using
> blast (or blast-like) tools and configuring them as needed but it gave no
> results, because of too numerous hits i think.
> I would be very greatful if someone could help me on this topic.
> Thanks a lot for your help,
> Best regards,
> Benoît Varvenne,
> Bioinformatics pearson in charge,
> Genoway Lyon - France
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