[BiO BB] aligment of large sequences

[Renxue Wang]

Hi, there, 

Anybody knows any good program for alignment/comparison of large sequences, e.g., two genomes of closely related species, for identifying the inversion deletion and translocation. 

Thanks, 

Renxue Wang

-----Original Message-----
From: bio_bulletin_board-bounces+rwang=bccrc.ca at bioinformatics.org [mailto:bio_bulletin_board-bounces+rwang=bccrc.ca at bioinformatics.org] On Behalf Of Yaoqi Zhou
Sent: Friday, February 03, 2006 5:33 AM
To: The general forum at Bioinformatics.Org
Subject: Re: [BiO BB] (no subject)

The most recent comparison can be found in comparing SPEM with other
sequence alignment methods.

H. Zhou and Y. Zhou, ``SPEM: Improving multiple-sequence alignment with 
sequence profiles and predicted secondary structures'', Bioinformatics 
21, 3615--3621 (2005).

Download and/or run SPEM server at http://theory.med.buffalo.edu

Yaoqi Zhou, Associate Professor
**CHECK out Newly UPDATED webpage** on
http://theory.med.buffalo.edu
Department of Physiology and Biophysics
University at Buffalo, State University of New York
124 Sherman Hall,  Buffalo, NY 14214
(716) 829-2985 Fax (716) 829-2344
Email: yqzhou at buffalo.edu
NEW Office/Lab Address: 306/308 Cary Hall

On Feb 2, 2006, at 6:31 PM, Franklin Jose wrote:

> Hai everybody
> Is there any difference between tools, methods and algorithms in 
> sequence alignment?
>  
> Franklin
> Lecturer
> Govt. Arts College
> Udhagai-643002
>
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