[BiO BB] Need help on batch query on GO ontology

[idh at poulet.org]

Hi Raja,

I do not know how much detail you need, but you might want to have a look at a
tool I used recently: wego
   http://wego.genomics.org.cn/


Upload your gene ontology annotation file, and it will tell you how many genes
are in each go category. You can also fold the hierarchy down to a given level
(say level 2 if you want the tool to cumulatively count how many genes are in
each basal category).

Cheers,

Yannick


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http://www.unil.ch/dee/page28685_en.html

Quoting Raja Loganantharaj <logan at cacs.louisiana.edu>:

> I have a set of GO IDs for a set of genes and I would like to obtain
> their taxonomical GO hierarchy. The GO portal allow single ID at a time.
> Is there any API or software from which I enter or read in the set of GO
> ID or genes so that I get the clustered output based on their
> function(say). I have tried DAVID.
>
> Thanks and I appreciate you sharing your experience.
>
> Raja Loganantharaj
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