[BiO BB] looking for a tool for producing intron/exon structures

Jordi Puiggené jordi.puiggene at gmail.com
Mon Jun 12 11:19:26 EDT 2006

As Ryan, I used in my own app the module
Lincoln Stein) written in perl. It allows you to create several images
from the 'features' keys defined in an EMBL sequence file format, so if you
have an EMBL file format with 'exon/intron' features, you can generate a
graphic as Ryan has shown.
There are some examples on Bio::Graphics website.


2006/6/11, Weiqun Peng <pwill68 at yahoo.com>:
> Hi,
> I am looking for a software that can produce a graphic
> visualization of the gene model (intron/exon
> structure) if I tell it the genomic sequence of the
> gene and the CDNA. I need the software to be able to
> produce a figure that can be used for publications.
> Any pointers are appreciated. I searched through the
> archive and could not find any hits. Thanks in
> advance.
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