[BiO BB] RefSeq Accession Numbers

[hamid]

Hi Peter,
I tried this :
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[refseqp-acc:AP_000714]>uniprot+-ascii
but this error has been shown:
Error:No Entries found
when I remove the last part (>uniprot)
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[refseqp-acc:AP_000714]+-ascii
it retrieves the result for AP_000714.
but for your accession number:uniprot-acc:P13569 the reverse retrieves 
NP_000483 and when I try:
http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[refseqp-acc:AP_000483]>uniprot+-ascii
I get the result ... It is strange!

/*
 Hamid Nikbakht,
 M.Sc of Cell and Molecular Biology,
 Laboratory of Biophysics and Molecular Biology,
 Bioinformatics Center,
 Institute of Biochemistry and Biophysics(IBB),
 University of Tehran,
 Tehran,Iran.
 Tel: +98-21-6111-3322
 Fax: +98-21-6640-4680
 Alt. E-mail: nikbakht at ibb.ut.ac.ir
*/


-----Original Message-----
From: pmr at ebi.ac.uk
To: "The general forum at Bioinformatics.Org" 
<bio_bulletin_board at bioinformatics.org>
Date: Fri, 16 Jun 2006 16:38:22 +0100 (BST)
Subject: Re: [BiO BB] RefSeq Accession Numbers

> Hi Hamid,
> 
> > Does any body know, how can I retrieve SwissProt Accession number
> using
> > the
> > protein RefSeq accession number? It seems there is not any cross
> reference
> > between thses two databases!
> 
> No explicit cross reference, but enough information to find the link.
> 
> The EBI's SRS server will link from a UniProt entry to RefSeqP. I
> believe
> the link goes through UniParc (the UniProt archive).
> 
> As a shortcut, you can insert the SwissProt accession of your choice
> into
> this URL:
> 
> http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[uniprot-acc:P13569]>refse
> qp
> 
> (add +-ascii to the end to get the original entry)
> 
> Hope that helps
> 
> Peter
> 
> 
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