[BiO BB] Obtaining Genomic Sequence
Sudhindra.Gadagkar at notes.udayton.edu
Sudhindra.Gadagkar at notes.udayton.edu
Thu Mar 2 10:01:29 EST 2006
Ryan,
You may already know some of these steps, but let me list them anyway,
with an example (accession number NM_000518 (which is a special kind of
accession number called the RefSeq number - check out
http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html#AccessionB for
definitions) for the mRNA of HBB, the beta hemoglobin gene of human) .
1. Enter your accession number in the NCBI homepage
(http://www.ncbi.nlm.nih.gov/) and hit your "Enter" key.
2. In the next page (the Entrez page) click on the "Gene".
3. It will take you to a brief summary of the gene.
4. Click on the gene name (HBB in this case)
5. By default it takes you to a "Full Report" on the gene in the next
page.
6. Change the "Full Report" (which is in a drop-down box on top) to "Gene
Table".
7. And you have it - schematics, hyperlinked exons, introns and all.
Hope this helps.
Sudhindra
----------------------------------------------------------------------------
Sudhindra R. Gadagkar, Ph.D.
Department of Biology
University of Dayton
300 College Park
Dayton, OH 45469-2320
Ph: (937) 229-2410
Fax: (937) 229-2021
Email: gadagkar at notes.udayton.edu
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"Ryan Golhar" <golharam at umdnj.edu>
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Subject
[BiO BB] Obtaining Genomic Sequence
If I have an accession # for a gene that I know occurs on a particular
chromosome, how can I get the full genomic sequence for that gene
containing all the exons and introns?
Ryan
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