[BiO BB] Building an alignment from BLAST hsp
golharam at umdnj.edu
Mon Mar 27 11:50:42 EST 2006
I have a BLAST alignment: query sequence and database sequence.
The alignment is only showing the HSP from the blast output as expected,
however I want to build an alignment of the entire database sequence
against my query sequence.
I tried using needle from EMBOSS, however its aligning the sequences
completely different than BLAST does. What I'd really like is a way to
anchor the alignment based on the BLAST HSP. Does anyone know how to do
this, or what tool(s) will allow me to do this?
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