[BiO BB] Re: Protein Features Extractors

[Mike Marchywka]

Have you looked at the ncbi tools?
There is a lot buried in conserved domains.
I just happen to be looking at Ig domains:
http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=smart00409



-----Original Message-----
From:
bio_bulletin_board-bounces+mmarchywka=eyewonder.com at bioinformatics.org
[mailto:bio_bulletin_board-bounces+mmarchywka=eyewonder.com at bioinformati
cs.org]On Behalf Of jay ananth
Sent: WednesdayMay-17-2006 11:48 PM
To: The general forum at Bioinformatics.Org
Subject: [BiO BB] Re: Protein Features Extractors


hi,
   i have a doubt... how to find orthologous sequences and how to
extract them... its important for my project ....

On 5/18/06, Ulisses Dias <ulimard at yahoo.com.br> wrote:
> Hi all,
>
>   I'd like to find papers or algorithms that extract protein features like
> fold, 3d-motifs, functional-linkages, domain, protein clefts or surface
> cavities and others relevant aspects from protein structures.
>
>   I'd be glad if someone could help me.
>
> Atenciosamente
>    Ulisses Dias
> 		
> ---------------------------------
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