[BiO BB] API for gene ontology retrieval?
Erick Antezana
erant at psb.ugent.be
Wed Nov 8 05:18:29 EST 2006
Hi Ahmed,
the next release of the onto-perl suite will provide this
functionality (still fixing the obo2owl conversion).
We're also developing a web page for providing this service. Keep
tuned...
Check out http://www.cellcycleontology.org
In principle, the API is for any OBO ontology (like GO, and of
course CCO).
Cheers,
erick
Ahmed Moustafa wrote:
> Hi All,
> Is there some API or an automated method to retrieve the annotation
> (gene ontology?) of a set of sequences?
> I believe BLAST is necessary but after BLASTing the sequences, how can
> I get the annotations (e.g. cellular component, pathway, biological
> function...) of (for example) the best hit for each sequence?
> Your help will be appreciated so much!
> Thanks in advance,
> Ahmed
>
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Erick Antezana Tel: 32 (0) 9 3313824
DEPARTMENT OF PLANT SYSTEMS BIOLOGY Fax:32 (0)9 3313809
GHENT UNIVERSITY/VIB, Technology Park 927, B-9052 Gent, Belgium
Vlaams Interuniversitair Instituut voor Biotechnologie VIB
mailto:erant at psb.ugent.be http://www.psb.ugent.be
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