[BiO BB] Can you explain theses results?
Daniel Xavier de Sousa
danielucg at yahoo.com.br
Thu Apr 26 11:08:56 EDT 2007
Hi for all
Please, you would see theses tests in serial machine, but important to cluster.
What do you think about it?
Please look theses tests using BLASTP:
Length Seq Query -- HITs -- TIME
10000 -- 3 -- 8min51sec
10000 -- 500 -- 7min41sec
----------------------------------
Length Seq Query -- HITs -- TIME
9000 -- 2 --
7min11sec
9000 -- 500 -- 6min49sec
----------------------------------
Length Seq Query -- HITs -- TIME
3000 -- 3 -- 2min54sec
3000 -- 500 -- 2min52sec
Theses
times are very strange. You can see which the sequence of 10000 bases
and 3 hits get more time than another sequence of 10000 bases but with
500 hits. So, I can conclude: BLASTP is not sensitive to similarity,
difference of BLASTN.
But the most important, why this happened? Can anybody explain theses results?
Thanks for all
Daniel
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