[BiO BB] all vs. all COGs?

[Mike Marchywka]

If you really get stuck you can check for algorithm ideas here: 

http://www.google.com/search?hl=en&q=biological+alignment+site%3Aciteseer.ist.psu.edu

I'm in the process of writing my own alignment stuff based on exact string matches
and just trying it out on some real test cases. If you can cite background on your particular
objectives and any known tools and their limitations for your usage that may help many readers here.

If you can identify something particularly relevant, contacting authors can be helpful. 



Mike Marchywka
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> Date: Fri, 21 Dec 2007 17:00:02 -0800
> From: idoerg at gmail.com
> To: BBB at bioinformatics.org
> Subject: [BiO BB] all vs. all COGs?
>
> Hi,
>
> Is there an all-vs-all comparison of COGs out there? I am basically looking
> for a distance mapping based on profile alignments between COG families. Has
> this been done?
>
> thanks,
>
> Iddo
>
>
>
> --
>
> I. Friedberg
>
> "The only problem with troubleshooting is that
> sometimes trouble shoots back."
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb

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