[BiO BB] plotting antigenicity or likelihood to stimulate an immune response

[Masoud Yousefi]

Hi All

Does anybody know a program that can be used to plot
antigenicity or likelihood to stimulate an immune response?

We have a package of sequences, the DSE sequences, and we would like to
plot the antigenicity of these peptides. We expect to see some kind of
linear plot, or average score over amino acids chosen from a moving
window across the sequence (the longest sequence is 16 amino acids or
so, so we'd like to know which 5 or 6 amino acid sequences from there
are antigenic).

Cheers
M.
--
Masoud Yousefi 
Senior Statistical Analyst 
Cashman Lab 
Brain Research Centre 
University of British Columbia 
2211 Wesbrook Mall, Vancouver, BC, V6T 2B5 
E-mail: masoud.yousefi at ubc.ca 

Tel:  (604) 827-3307 
Fax:  (604) 822-7299