答复: [BiO BB] Alternative splicing soft

[wangk]

    Thank you very much! I am trying to install Genome Browser on my
computer.


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发件人: bio_bulletin_board-bounces+wangk=chgc.sh.cn at bioinformatics.org
[mailto:bio_bulletin_board-bounces+wangk=chgc.sh.cn at bioinformatics.org] 代表
Ann Loraine
发送时间: 2007年9月5日 5:02
收件人: General Forum at Bioinformatics.Org
主题: Re: [BiO BB] Alternative splicing soft

Hi,

Probably you would want to use a desktop genome browser.

If you write a sim4 format to bed or gffv3 converter, then you might be able
to use the Integrated Genome Browser to view the alignments.

See:

http://genoviz.sourceforge.net/

for details.

Also,

http://www.bioviz.org/plant_igb
http://www.bioviz.org

may be helpful...esp. the links describing data files & formats.

Another option would be to use Apollo. It may already have the ability to
load sim4 output.

Best,

Ann Loraine

On 9/4/07, wangk <wangk at chgc.sh.cn> wrote:
>
> Dear all
>
>     I had alignmented EST sequences against genome for alternative
> splicing
> analysis with sim4, but I haven't known a soft for drawing the pictures of
> alternative splicing result generated by sim4.
>
>    Is there anyone can help?
>
> Kai Wang
>
>
>
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