[BiO BB] How to make a network graphic using my genes in pathways?

[Timothy O'Connor]

I recommend cytoscape: http://www.cytoscape.org/.

I haven't done it yet but it seems to be set up to run analyses as
well. The pictures come out pretty good as well.

Tim

On Wed, Apr 2, 2008 at 4:49 PM, Gaurav Pandey <pandey.gaurav at gmail.com> wrote:
> You can try GraphViz (http://www.graphviz.org/).
>
>  Gaurav
>
>
>
>  On Tue, Apr 1, 2008 at 9:04 PM, Jinyan Huang <hiekeen at gmail.com> wrote:
>
>  > I have 20 pathways. My interesting genes are in these pathways. There
>  > are some genes overlaps in these pathways. How can I make a graphic
>  > network using these genes? It means connecting these pathways through
>  > these overlap genes. What kind of software can I use?
>  >
>  > Thank you very much in advance.
>  >
>  >
>  > --
>  > Best regards,
>  > Jinyan Huang (ekeen)
>  > School of Life Sciences and Technology, 1302 Room
>  > Tongji University
>  > Siping Road 1239, Shanghai 200092
>  > P.R. China
>  > Tel :0086-21-65981041
>  > Msn: hiekeen at hotmail.com
>  > eMail: hiekeen at gmail.com
>  >
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>
>  --
>  Gaurav Pandey Email: gaurav at cs.umn.edu
>  Computer Science Department Webpage: www.cs.umn.edu/~gaurav
>  University of Minnesota Tel: 612-701-2494
>
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