[BiO BB] software for protein threading

[Martin Gollery]

There are a number of them out there, Javier, but you might want to
run them through something more comprehensive such as InterProScan
first.

Best Regards,
Marty

On Mon, Jun 9, 2008 at 10:43 AM, Javier Forment Millet
<jforment at ibmcp.upv.es> wrote:
> Hi, all...
>
> We are attempting to do a temptative functional annotation for EST-derived
> partial ORFs which didn't found an annotated similar sequence in BLAST
> searches. Could anyone suggest a software for automated fold recognition by
> threading in local computers?
>
> Thanks in advance,
>
> Javier.
>
>
> --
> Javier Forment Millet
> Instituto de Biología Celular y Molecular de Plantas (IBMCP) CSIC-UPV
>  Ciudad Politécnica de la Innovación (CPI) Edificio 8 E, Escalera 7 Puerta E
>  Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain
> Tlf.:+34-96-3877858
> FAX: +34-96-3877859
> jforment at ibmcp.upv.es
>
>
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Martin Gollery
Senior Bioinformatics Scientist
TimeLogic- a Division of Active Motif
775-833-9113
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Incline Village, NV 89451