[BiO BB] How to get the special Transcription Factor target sequences?

[Christopher Garay]

It looks like you are an academic user, so I think that this site may be the
one you want to use to register for transfac:
http://www.gene-regulation.com/register

Chris Garay

On 5/28/08, Jinyan Huang <hiekeen at gmail.com> wrote:
>
> Thank you very much for your suggestion.
>
> It is easy to registrate on gene-regulation.com. But when I browse the
> TRANSFAC database, it links to http://www.biobase-international.com/.
> For a free trial, it must finish a registration form. It is hard to
> pass this registration form. It is like this
> http://www.biobase-international.com/pages/index.php?id=456.
>
>
> In JARSPAR I can not find the factors which I interested
>
> no profiles in JASPAR satisfies search criteria
>
>
>
> 2008/5/29 lichunjiang <lichunjiang at sibs.ac.cn>:
>
> >
> >
> > Really? I registrated for gene-regulation.com a couple of years ago, it
> is
> > quite easy.�It does not make sense that you can not register. Or you
> > should just write to the service to fix the problem.
> >
> > Actually,
> > it is free to use a reduced version. For the full professional version,
> > you need to pay.
> >
> > Besides Transfac, I recommend another
> > database: JARSPAR available at http://jaspar.genereg.net/.�It is
> > totally free to use.
> > Hope this help.
> > Good luck!
> >
> >
> >
> >> It seems it is hard to pass the  registration.
> >>
> >> 2008/5/28 J Greenbaum <jgbaum at gmail.com>:
> >>> The
> > Transfac database (www.gene-regulation.com/pub/databases.html)
> >>> should have what you are looking for...
> >>>
> >>> Jason Greenbaum
> >>> Postdoctoral Fellow
> >>>
> > La Jolla Institute for Allergy & Immunology
> >>>
> >>> 2008/5/27 Jinyan Huang <hiekeen at gmail.com>:
> >>>> I want to get the Transcription Factor target sequences.
> > They are
> >>>>
> > Oct4 $B!$ (BSox2 $B!$ (BcMyc $B!$ (BKlf4 $B!$ (BNanog $B!$ (BLin28.
> >>>> Is there such free database? Or should I just search it one
> > by one
> >>>> from the literature?
> >>>>
> >>>>
> >>>> --
> >>>> Best regards,
> >>>> Jinyan Huang (ekeen)
> >>>> School of Life
> > Sciences and Technology, 1302 Room
> >>>> Tongji University
> >>>> Siping Road 1239, Shanghai 200092
> >>>> P.R.
> > China
> >>>> Tel :0086-21-65981041
> >>>> Msn:
> > hiekeen at hotmail.com
> >>>> eMail: hiekeen at gmail.com
> >>>>
> >>>>
> > _______________________________________________
> >>>> BBB
> > mailing list
> >>>> BBB at bioinformatics.org
> >>>>
> > http://www.bioinformatics.org/mailman/listinfo/bbb
> >>>>
> >>>
> >>>
> > _______________________________________________
> >>> BBB mailing
> > list
> >>> BBB at bioinformatics.org
> >>>
> > http://www.bioinformatics.org/mailman/listinfo/bbb
> >>>
> >>
> >
> >>
> >>
> >> --
> >> Best regards,
> >>
> > Jinyan Huang (ekeen)
> >> School of Life Sciences and Technology,
> > 1302 Room
> >> Tongji University
> >> Siping Road 1239, Shanghai
> > 200092
> >> P.R. China
> >> Tel :0086-21-65981041
> >> Msn:
> > hiekeen at hotmail.com
> >> eMail: hiekeen at gmail.com
> >>
> >> _______________________________________________
> >> BBB
> > mailing list
> >> BBB at bioinformatics.org
> >>
> > http://www.bioinformatics.org/mailman/listinfo/bbb
> >>
> >>
> >
> >
> >
> > --
> > lichunjiang at sibs.ac.cn
> > Institute of
> > Biochemistry and Cell Biology,
> > Shanghai Institutes for Biological
> > Sciences,
> > Chinese Academy of Sciences
> >
> > _______________________________________________
> > BBB mailing list
> > BBB at bioinformatics.org
> > http://www.bioinformatics.org/mailman/listinfo/bbb
> >
> >
>
>
>
> --
> Best regards,
> Jinyan Huang (ekeen)
> School of Life Sciences and Technology, 1302 Room
> Tongji University
> Siping Road 1239, Shanghai 200092
> P.R. China
> Tel :0086-21-65981041
> Msn: hiekeen at hotmail.com
> eMail: hiekeen at gmail.com
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb
>