[BiO BB] protein sequence for all organism

[Yvan Strahm]

Hello All,

I want to get the all the possible protein sequence for eukaryote.
I already downloaded nr from the NCBI ftp site, but i wish to have them
sorted by organism, one folder per species. Currently I am downloading data
from ftp://ftp.ncbi.nih.gov/genomes/X/protein/protein.fa.gz . Does this
resource represent all the proteins sequences which are available in
genbank? Or do you know a better way of getting a comprehensive data set?

Thanks for your help and time,
Cheers,
yvan