[BiO BB] 454/Newbler assembly finishing software?

Edith Schlagenhauf ediths at botinst.uzh.ch
Tue Dec 1 11:00:47 EST 2009


Hi,

I've got a bunch of output files from a 454/Newbler de novo assembly
for a 8 Mb bacterial genome, ie. various SFF/FASTA/ACE files.

What are the most appropriate tools/software for viewing/evaluating the
results and for finishing rapidly by automation (there are still several
hundreds of gaps...)?
There is also a cosmid end library available, and various related genomes.


TIA for your input,
Edith



******************************************
Dr Edith Schlagenhauf
Bioinformatics
Institute of Plant Biology
University of Zurich
SWITZERLAND

e-mail: ediths AT botinst DOT uzh DOT ch
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