[BiO BB] how to search genes around certain SNP

[Eugene Bolotin]

I did this, I used a database of SNPs and positions from Refseq, and a
database of gene starts and ends from Refseq.
Then I cross referenced it using SQL. You can also use perl script.
EB

On Mon, Apr 12, 2010 at 3:15 AM, päivi siivola <pj.siivola at luukku.com> wrote:
> Hi!
>
> I would be interested to find out genes around spesific SNPs (genes which are ~ 1 MB away from SNP or less). What would be most efficient way to do this ?  Suggestions?
>
>
> Thanks in advance!
>
> Päivi Rosenström
>
> ....................................................................
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-- 
Eugene Bolotin, Ph.D.
Genetics Genomics and Bioinformatics
University of California Riverside
ybolo001 at student.ucr.edu
Dr. Frances Sladek Lab