[BiO BB] Programmatic access to pubmed

[Dan Bolser]

There was a related discussion on the bio2RDF mailing list (below).

HTH,
Dan.


From: Marc-Alexandre Nolin <manolin at gmail.com>
To: bio2rdf at googlegroups.com
Mailing-list: list bio2rdf at googlegroups.com; contact
bio2rdf+owners at googlegroups.com
List-Post: <http://groups.google.com/group/bio2rdf/post?hl=en_US>,
	<mailto:bio2rdf at googlegroups.com>
List-Help: <http://groups.google.com/support/?hl=en_US>,
<mailto:bio2rdf+help at googlegroups.com>
List-Archive: <http://groups.google.com/group/bio2rdf?hl=en_US>
Sender: bio2rdf at googlegroups.com

Hello,

I've finally put online a new version of Pubmed/medline at

http://pubmed.bio2rdf.org/sparql

The release information and copyrights notice are available on the
release endpoint http://release.bio2rdf.org/sparql or throw the
Bio2RDF service with the URI http://bio2rdf.org/release:pubmed

This release use nquads, so you can get the complete triples from a
single document whatever its depth from the main URI by specifying its
graph. For example, take a random pubmed ID, 17472304, so to get the
complete information about this record, you can ask the sparql query

select * where {graph <http://bio2rdf.org/pubmed_record:17472304> {?s ?p ?o}}

The RDFizer program used to create it is indicated in the release information.

Comments, request for change, anythings are welcome.

Thanks,

Marc-Alexandre Nolin

-- 
You received this message because you are subscribed to the Google
Groups "bio2rdf" group.
To post to this group, send email to bio2rdf at googlegroups.com.
To unsubscribe from this group, send email to
bio2rdf+unsubscribe at googlegroups.com.
For more options, visit this group at
http://groups.google.com/group/bio2rdf?hl=en.



On 28 April 2010 07:11, Manjula P. Thimma <Manjula.Thimma at kaust.edu.sa> wrote:
> Dear All,
>
> I am heading to create a list of reference articles that discuss about Cancer Metabonomics/Metabolomics using NMR (either in the abstract, or in any part of the text) from pubmed. Since Manual fishing is cumbersome, I am wondering is there any programmatic access for this database?
>
> Any pointers towards this is much appreciated.
>
> Best Regards
> Manjula
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb
>