[BiO BB] what is the best software/algorithm for miRNA target prediction ?

[Seema Trivedi]

Hi

Have you tried contacting people at miRBase http://www.mirbase.org/? If you seek their help, they may inform you about the tools that they have used. Moreover, there are web based tools where one can submit the sequence of interest to find whether it is miR target. At present I do not recall which ones they are. I'll post the details as soon as I can remember these links.

All the best
 
> Date: Wed, 10 Feb 2010 21:55:10 +0100
> From: kry.kieslowski at gmail.com
> To: bbb at bioinformatics.org
> Subject: [BiO BB] what is the best software/algorithm for miRNA target prediction ?
> 
> Dear all,
> 
> I'm a master student who is trying to write a master thesis about 
> predicting miRNA targets. I was wondering if somebody could advise me 
> the best software/algorithm for miRNA target prediction. Or the one that 
> scientific community uses the most. 
> 
> I would really appreciate any kinds of help/advise.
> 
> Thanks in advance
> 
> Ilgar Abdullayev
> Computational and Systems Biology
> Royal Institute of Technology
> Stockholm Sweden
> Tel: +46 707 821 954
> 
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