[BiO BB] protein merge

[Rafik Ouerchefani]

Hello,

I'm looking for a software that can merge two proteins with a shared domain
(given .pdb files).
With sequences it would be like this :

seq 1 :  MSARIATRRRDKKARRKLQ*ELGATRLVVHRT*
seq 2 :  *ELGATRLVVHRT*PRHIYAPNGSEVLVQVIAA
result : MSARIATRRRDKKARRKLQ*ELGATRLVVHRT*PRHIYAPNGSEVLVQVIAA

These two sequences have a common sequence ELGATRLVVHRT (end of the first
and beginning of the second). It's easy with sequences but I have to do it
with 3D structures. I have the 3D structures of both sequences 1 and 2.

Thanks,

- Rafik