[BiO BB] Gene Ontology

Gaj Stan (BIGCAT) stan.gaj at maastrichtuniversity.nl
Thu Oct 28 11:41:56 EDT 2010


You could also try out GO-Elite ( http://www.genmapp.org/go_elite/ ) with all filter settings turned off, since you don't need that for your specific question. If you need a hand with this tool, just give a shout!

Best,

  -- Stan

-----Original Message-----
From: bbb-bounces at bioinformatics.org [mailto:bbb-bounces at bioinformatics.org] On Behalf Of Gaurav Pandey
Sent: Wednesday, October 27, 2010 9:23 PM
To: General Forum at Bioinformatics.Org
Subject: Re: [BiO BB] Gene Ontology

The DAVID tool (http://david.abcc.ncifcrf.gov/) is one of the best for this
task. Also, Gene Ontology itself has several annotation tools listed at
http://www.geneontology.org/GO.tools.microarray.shtml.

I'll be happy to help out more if contacted directly.

Gaurav

On Wed, Oct 27, 2010 at 12:37 AM, nikhil gadewal <ngadewal at yahoo.com> wrote:

> Dear All,
>
> I have a list of genes with gene symbol (entrez) which has to be annotated
> by
> gene ontology.
>
> I am looking for online tool which takes genelist as input and will give
> output the genes which are involved in bioloical process and molecular
> funtion.
> For eg. Out of 100 genes (genelist) submitted, will give output say 30
> genes are
> involved in "Signal transduction" (biological process).
> If anyone know such kind of tool than please let me know.
> Thankyou in advance.
>
> Nikhil
>
>
>
>
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-- 
Gaurav Pandey                                  Email:
gaurav at compbio.berkeley.edu
Plant & Molecular Biology Department      Webpage:
compbio.berkeley.edu/people/gaurav
University of California, Berkeley                    Tel: 612-701-2494
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