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<DIV><FONT face=Arial size=2>Hi,</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>I want to construct suffix trees to extract repeats
from sequences.</FONT></DIV>
<DIV><FONT face=Arial size=2>I found several softwares from the web (by Dan
Gusfield, Ting Chen, etc).</FONT></DIV>
<DIV><FONT face=Arial size=2>Has anyone used any recommended suffix tree
software?</FONT></DIV>
<DIV><FONT face=Arial size=2>Are there any implementation or softwares of
suffix trees which allows long sequence inputs and </FONT></DIV>
<DIV><FONT face=Arial size=2>generate results in linear time?</FONT></DIV>
<DIV><FONT face=Arial size=2>Please give me some suggestions about suffix
tree software and where to download the web.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Thanks a lot for your help!</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Best regards,</FONT></DIV>
<DIV><FONT face=Arial size=2>Chia-Yu</FONT></DIV>
<DIV><FONT face=Arial size=2>------------<BR>Chia-Yu Su<BR>Bioinformatics
Program of <BR>Taiwan International Graduate Program<BR>Academia Sinica,
Taiwan</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>E-mail: <A
href="mailto:cysu@iis.sinica.edu.tw">cysu@iis.sinica.edu.tw</A><BR>Phone:
+886-2-27883799 ext. 2302<BR>Fax: +886-2-27824814</FONT></DIV></BODY></HTML>