I am looking for various options to analyze a set of 300bp long
orthologous sequences from a group of phylogenetically related species.
Its like 5-8 promoter dna sequences per gene for around 2000 genes.<br>
What can be the best ways to do this analysis, I looked at some
phylogenetic tools, but most have limitations like web-based, just 2
All your suggestions... and anyone experienced with similar stuff. ... I welcome it all...<br>