Well ... I am interested in the other possible analysis --- looking at
equence from all these .. and find conserved motifs .. etc ... <br>
the species are quite well known phylogenetically ... but any other useful things to do with them .. would be helpful ....<br>
<br>
Thanks ..<br>
Sumit<br><br><div><span class="gmail_quote">On 10/19/05, <b class="gmail_sendername">Joel Dudley</b> <<a href="mailto:joel.dudley@asu.edu">joel.dudley@asu.edu</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
What type of analysis would you like to do? Do you want to calculate<br>rates of evolution? Construct a phylogeny?<br><br>- Joel<br>__________________________________________________________<br>MacResearcher - Articles, News, and Reviews for the Mac-loving Scientist
<br><a href="http://www.macresearcher.com">http://www.macresearcher.com</a><br><br><br>On Oct 9, 2005, at 1:44 PM, Samantha Fox wrote:<br><br><br>><br>> Hii...<br>> I am looking for various options to analyze a set of 300bp long
<br>> orthologous sequences from a group of phylogenetically related<br>> species. Its like 5-8 promoter dna sequences per gene for around<br>> 2000 genes.<br>><br>> What can be the best ways to do this analysis, I looked at some
<br>> phylogenetic tools, but most have limitations like web-based, just<br>> 2 sequences, etc.<br>><br>> All your suggestions... and anyone experienced with similar<br>> stuff. ... I welcome it all...<br>>
<br>> Thanks.<br>> Samantha</blockquote></div><br>