I am looking for various options to analyze a set of few hundered bp
orthologous sequences from a group of phylogenetically related species.
Its like 5-8 homologous promoter dna sequences per gene for around
thousand genes. The motivation is to get the conserved motifs which
have remained constant under selection.<br>
What can be the best ways to do this analysis, I looked at some
phylogenetic tools, but most have limitations like web-based, just 2
All your suggestions... and anyone experienced with similar stuff. ... I welcome it all...<br>