<div>A graphical comparison of two multiple alignments can be done using the  AltAVisT tool <a href="http://bibiserv.techfak.uni-bielefeld.de/altavist/">http://bibiserv.techfak.uni-bielefeld.de/altavist/</a></div>
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<div>Stefanie </div>
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<div><span class="gmail_quote">On 11/2/05, <b class="gmail_sendername">Dr. Christoph Gille</b> <<a href="mailto:christoph.gille@charite.de">christoph.gille@charite.de</a>> wrote:</span></div>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">To compare different algorhythms for multiple sequence alignments<br>I need to compare the alignment outputs to a benchmark alignment.
<br><br>Do programs exist that can take a computed alignment and compare it<br>to the "optimal" alignment and produce a score ?<br><br>Many thanks<br>Christoph<br><br>_______________________________________________
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