<div id="RTEContent">Thanks to Ann and Chen for reply. <br>Infact FlyBase itself is providing the batch reports, i came to know this lately. I was able to get Genebank accessions from FlyBase (http://flybase.net/cgi-bin/fbidbatch.html). <br>Now i have one more question, i want to search for annotations using these IDs agianst DAVID (http://david.abcc.ncifcrf.gov/). I got all the accession numbers corresponding to my FlyBase gene IDs, do i have to check all these accessions numbers against DAVID or only accession number per one gene is enough, i am not sure does it make any sense. <br><br>I used GOToolBox (http://126.96.36.199/GOToolBox/index.php?page=dataset) for annotations as it will accept FlyBase IDs but i want to check DAVID also for the same.<br><br>Thanks alot for your time<br><br><br><br><b><i>Ann Loraine <email@example.com></i></b> wrote:<blockquote class="replbq" style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;">
Hello,<br><br>Maybe this will help...<br><br>Does FlyBase provide sequence data?<br><br>If you can get a mapping of FlyBase ids onto mRNA sequences, then you<br>can use blast to search against a database of RefSeq fruit fly mRNA<br>sequences.<br><br>Then it should be relatively easy to get Entrez gene ids from the<br>perfect-match RefSeq ids identified in the blast search.<br><br>-Ann<br><br>On 1/8/06, Liangyou Chen <firstname.lastname@example.org> wrote:<br>> I am creating tools for such conversions. But I don't know how to<br>> connect the FlyBase ID to GeneBank accession or entrez ID. If you<br>> can show me an example how to do the conversion in detail, I will make a tool<br>> for you.<br>><br>> Thanks.<br>><br>> On 1/6/06, Rami Reddy.V <email@example.com> wrote:<br>> > Hello all,<br>> > I am looking for a tool to convert FlyBase IDs to Gene Bank accession or<br>> > entrez IDs, if anybody knows please let me know.<br>> > Thanks
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