<DIV>hi</DIV> <DIV> </DIV> <DIV>Follow this site ...you could use Kegg's wsdl and write small scripts that could generate the required output</DIV> <DIV> </DIV> <DIV><A href="http://www.genome.jp/kegg/soap/">http://www.genome.jp/kegg/soap/</A></DIV> <DIV> </DIV> <DIV>-govind<BR><BR><B><I>Samantha Fox <bioinfosm@gmail.com></I></B> wrote:</DIV> <BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">Is there a good quick and dirty way to find the genes involved in a particular KEGG pathway .. for a particular organism, say Drosophila ?<BR><BR>Cheers...<BR><BR> <DIV><SPAN class=gmail_quote>On 1/19/06, <B class=gmail_sendername>govind mk</B> <<A href="mailto:mkgovindis@yahoo.com">mkgovindis@yahoo.com</A>> wrote:</SPAN> <BLOCKQUOTE class=gmail_quote style="PADDING-LEFT: 1ex; MARGIN: 0pt 0pt 0pt 0.8ex; BORDER-LEFT: rgb(204,204,204) 1px solid"> <DIV>Is this what you are looking for</DIV> <DIV> </
DIV>
<DIV><A onclick="return top.js.OpenExtLink(window,event,this)" href="ftp://ftp.genome.jp/pub/kegg/tarfiles/" target=_blank>ftp://ftp.genome.jp/pub/kegg/tarfiles/ </A></DIV> <DIV> </DIV> <DIV>-govind</DIV> <DIV><SPAN class=e id=q_108e5d9a2cf064ba_1> <DIV><BR><BR><B><I><A onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:forward@hongyu.org" target=_blank>forward@hongyu.org </A></I></B>wrote:</DIV> <BLOCKQUOTE style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: rgb(16,16,255) 2px solid">I am wondering whether anyone has a downloable file containing all protein<BR>sequences of KEGG pathway ( e.g., in FASTA format)? I remember seeing it<BR>somewhere on KEGG website, but I couldn't find it anymore.<BR><BR>Basically, I want to BLAST my query sequences against the file to find<BR>out the pathway information of my sequences. I can't use the web <BR>interface of KEGG directly because I have too many sequences to query. It<BR>would be nice if I can down
load a
local copy.<BR><BR>Thanks!<BR><BR>-- <BR>Hongyu Zhang, Ph.D.<BR>Computational Biologist<BR>Ceres Inc.<BR>1535 Rancho Conejo Blvd <BR>Thousand Oaks, CA 91320<BR>Phone: (805)376-6504 ext 1204<BR><BR><BR><BR>_______________________________________________<BR>Bioinformatics.Org general forum - <A onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:BiO_Bulletin_Board@bioinformatics.org" target=_blank>BiO_Bulletin_Board@bioinformatics.org</A><BR><A onclick="return top.js.OpenExtLink(window,event,this)" href="https://bioinformatics.org/mailman/listinfo/bio_bulletin_board" target=_blank>https://bioinformatics.org/mailman/listinfo/bio_bulletin_board </A><BR></BLOCKQUOTE> <DIV><BR></DIV></SPAN></DIV><SPAN class=ad> <div></div> <HR SIZE=1> Yahoo! Photos – Showcase holiday pictures in hardcover<BR><A onclick="return top.js.OpenExtLink(window,event,this)"
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