I don't know what the trouble is, but why are you using -Q anyway? If you want to use the PSSM for anything, like an RPS-BLAST database, for example, you should use the -C option instead.<br><br>Marty<br><br><div><span class="gmail_quote">
On 3/8/06, <b class="gmail_sendername">manjari g</b> <<a href="mailto:smanjari@gmail.com">smanjari@gmail.com</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I am research student at Bioinformatics Centre, University of Pune,<br>Pune (INDIA). We have 16 processor SGI-Altix in the department. I have<br>downloaded HTC-Blast propack 3 from SGI website. Normal blast works<br>fine. however for blastpgp (psi-blast) i want to store PSSM files
<br>using -Q option. I am unable to create separate outfiles in the manner<br> it does using out_dir option. Please help me.<br>With regards<br>Sunitha Manjari<br>Bioinformatics Centre<br>Unviersity of Pune<br>Pune -INDIA
<br>_______________________________________________<br>Bioinformatics.Org general forum - <a href="mailto:BiO_Bulletin_Board@bioinformatics.org">BiO_Bulletin_Board@bioinformatics.org</a><br><a href="https://bioinformatics.org/mailman/listinfo/bio_bulletin_board">
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board</a><br></blockquote></div><br><br clear="all"><br>-- <br>-- <br>Martin Gollery<br>Associate Director<br>Center For Bioinformatics<br>University of Nevada at Reno
<br>Dept. of Biochemistry / MS330<br>775-784-7042<br>-----------