<div>Dear Dr.Gille</div> <div>Iworked with ZDOCK.For the protein protein docking you need to have prior knowledge of your proteins should interact.Once you have that ,take the most favorable orientation and can calculate the interaction energies( like between binding region of one protein with residues of other ).Accerlys have a script that calculates the interaction energies.Atleast from these you can whther interactions are favorable or not</div> <div>Hope this helps</div> <div>John <BR><BR><B><I>"Dr. Christoph Gille" <email@example.com></I></B> wrote:</div> <BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid">I have two protein structures and want to answer the question whether<BR>they can directly interact or not. I have run the docking program<BR>zdock. I do not know how to interpret the output to tell whether<BR>interaction is energetically possible or not. Can somebody please<BR>help me
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