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<DIV><FONT face=Arial size=2>Dear members,</FONT></DIV>
<DIV><FONT face=Arial size=2>I have sequences after PCR and direct sequencing of
some hepatitis c virus from patients.</FONT></DIV>
<DIV><FONT face=Arial size=2>The sequencer output has some positions that are
A/g, or C/t etc...I want to know if these represent quasispecies or ambiguities?
and if they represent quasispecies, what is the best way to deal
with that? to write all different combinations of these in the sequence as
different quasispecies or what?</FONT></DIV>
<DIV><FONT face=Arial size=2>Thank you all in advance for your kind
assistance,</FONT></DIV>
<DIV><FONT face=Arial size=2>Mahmoud</FONT></DIV></BODY></HTML>