To get a hold of all teminology related to subunits and subdomains <br>Grab the book and Read it once or twice :) <br>Bioinformatics : Genes, Proteins & Computers <br>Eds. Christine Orengo and JM Thornton <br><br>To split your proteins try with PROTEIN PEELING approach,
<br>Web Server is available here : <a href="http://www.ebgm.jussieu.fr/~gelly/">http://www.ebgm.jussieu.fr/~gelly/</a><br><br>Happy splitting with your proteins, <br>Shameer Khadar <br>NCBS - TIFR <br><br><br><div><span class="gmail_quote">
On 9/23/06, <b class="gmail_sendername">Kalidas Yeturu</b> <<a href="mailto:ykalidas@gmail.com">ykalidas@gmail.com</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hello Everyone<br> I am working on protein binding sites. I am not yet very much familiar with terminology - subunits,domains etc.,<br> <br> My work requires obtaining/splitting a protein PDB into various structural units such that each has binding site.
<br> For example 1A4G neuraminidase has two structural units - chain A and chain B both having binding sites.<br> But splitting a PDB based on chain-id alone, may not always be correct. Some manually curated database would be better.
<br><br> I would be grateful if anyone can cite a database where protein-PDB files corresponding to structural units having binding sites are provided for each protein.<br><br>Thanking You<br clear="all"><span class="sg">
<br>-- <br>Kalidas Y
<br><a href="http://ssl.serc.iisc.ernet.in/%7Ekalidas" target="_blank" onclick="return top.js.OpenExtLink(window,event,this)">http://ssl.serc.iisc.ernet.in/~kalidas</a>
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