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<DIV dir=ltr align=left><SPAN class=419252919-20102006><FONT face=Verdana
color=#0000ff size=2>Hi Shameer,</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=419252919-20102006> <FONT
face=Verdana color=#0000ff size=2>I really don't understand PISE anywhere near
well enough to explain it. When I said I was working with right now I should
have added that I am working with it for the first time. Maybe I
will actually understand it better in a few months, but not
yet. </FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=419252919-20102006><FONT face=Verdana
color=#0000ff size=2>Sorry,</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=419252919-20102006><FONT face=Verdana
color=#0000ff size=2>Ethan</FONT> </SPAN></DIV><BR>
<DIV class=OutlookMessageHeader lang=en-us dir=ltr align=left>
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<FONT face=Tahoma size=2><B>From:</B>
bio_bulletin_board-bounces+ethan.strauss=promega.com@bioinformatics.org
[mailto:bio_bulletin_board-bounces+ethan.strauss=promega.com@bioinformatics.org]
<B>On Behalf Of </B>Shameer Khadar<BR><B>Sent:</B> Friday, October 20, 2006
11:38 AM<BR><B>To:</B> General Forum at Bioinformatics.Org<BR><B>Subject:</B>
Re: [BiO BB] PISE interface for blast<BR></FONT><BR></DIV>
<DIV></DIV>Dear Ethan, <BR><BR>I also need to impliment Pise interface for
Several bioinfo program to be used internally for a bioinformatics course. It
will be nice If you can explain - step-by-step . <BR><BR>Cheers, <BR>Shameer
Khadar <BR><BR><BR>
<DIV><SPAN class=gmail_quote>On 10/20/06, <B class=gmail_sendername>Ethan
Strauss</B> <<A
href="mailto:ethan.strauss@promega.com">ethan.strauss@promega.com</A>>
wrote:</SPAN>
<BLOCKQUOTE class=gmail_quote
style="PADDING-LEFT: 1ex; MARGIN: 0pt 0pt 0pt 0.8ex; BORDER-LEFT: rgb(204,204,204) 1px solid">
<DIV>
<DIV dir=ltr align=left><SPAN><FONT face=Verdana color=#0000ff size=2>Hi,
</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN> <FONT face=Verdana
color=#0000ff size=2>I am working with a PISE interface for BLAST right now. I
don't pretend to be know what I am doing, but I am doing something
:-)</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN> <FONT face=Verdana
color=#0000ff size=2>Anyway, I could send you the interface I have and you
could at least use it as a starting point. Alternately, you could take a look
at <A onclick="return top.js.OpenExtLink(window,event,this)"
href="http://www.pasteur.fr/recherche/unites/sis/Pise/XML/"
target=_blank>http://www.pasteur.fr/recherche/unites/sis/Pise/XML/</A>. There
is an example there...</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN><FONT face=Verdana color=#0000ff
size=2>Ethan</FONT></SPAN></DIV><BR>
<DIV lang=en-us dir=ltr align=left>
<HR>
<FONT face=Tahoma size=2><B>From:</B>
bio_bulletin_board-bounces+ethan.strauss=<A
onclick="return top.js.OpenExtLink(window,event,this)"
href="mailto:promega.com@bioinformatics.org"
target=_blank>promega.com@bioinformatics.org</A> [mailto:<A
onclick="return top.js.OpenExtLink(window,event,this)"
href="mailto:bio_bulletin_board-bounces+ethan.strauss=promega.com@bioinformatics.org"
target=_blank>bio_bulletin_board-bounces+ethan.strauss=promega.com@bioinformatics.org
</A>] <B>On Behalf Of </B>Samantha Fox<BR><B>Sent:</B> Thursday, October 19,
2006 10:40 AM<BR><B>To:</B> The general forum at
Bioinformatics.Org<BR><B>Subject:</B> [BiO BB] PISE interface for
blast<BR></FONT><BR></DIV>
<DIV><SPAN class=e id=q_10e662fe0c8dc61c_1>
<DIV></DIV><BR>Hi,<BR>any of you familiar with generating PISE interface for a
database that I wish to blast.<BR>Do we have to write a separate xml for that
? Any help or suggestion would be
welcome.<BR><BR>Thanks,<BR>~S<BR></SPAN></DIV></DIV><BR>_______________________________________________<BR>General
Forum at Bioinformatics.Org - <A
onclick="return top.js.OpenExtLink(window,event,this)"
href="mailto:BiO_Bulletin_Board@bioinformatics.org">BiO_Bulletin_Board@bioinformatics.org
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href="https://bioinformatics.org/mailman/listinfo/bio_bulletin_board"
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