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<p class=MsoNormal><font size=2 color=navy face=Arial><span lang=EN-GB
style='font-size:10.0pt;font-family:Arial;color:navy'>Hi<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span lang=EN-GB
style='font-size:10.0pt;font-family:Arial;color:navy'>Try this. It’s the HPD
you are looking for.<o:p></o:p></span></font></p>
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style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
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style='font-size:10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 color=navy face=Arial><span lang=EN-GB
style='font-size:10.0pt;font-family:Arial;color:navy'>Alex<o:p></o:p></span></font></p>
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<p class=MsoNormal><b><font size=2 face=Tahoma><span style='font-size:10.0pt;
font-family:Tahoma;font-weight:bold'>Van:</span></font></b><font size=2
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bio_bulletin_board-bounces+alex.bossers=wur.nl@bioinformatics.org
[mailto:bio_bulletin_board-bounces+alex.bossers=wur.nl@bioinformatics.org] <b><span
style='font-weight:bold'>Namens </span></b>Cox, Mike<br>
<b><span style='font-weight:bold'>Verzonden:</span></b> vrijdag 3 november 2006
16:45<br>
<b><span style='font-weight:bold'>Aan:</span></b>
BiO_Bulletin_Board@bioinformatics.org<br>
<b><span style='font-weight:bold'>Onderwerp:</span></b> [BiO BB] Hierarchical
Probe Design</span></font><o:p></o:p></p>
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<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p style='margin-bottom:12.0pt'><font size=2 face="Times New Roman"><span
style='font-size:10.0pt'>Dear All,<br>
<br>
Was wondering whether anyone knew of a suitable program for preparing
hierarchical groups of probes based on alignments of DNA, such as Hierarchical
Probe Designer:<br>
<br>
Design of long oligonucleotide probes for functional gene detection in a
microbial community; Chung et al.; Bioinformatics 2005 21(22):4092-4100<br>
<br>
I would love to use this program, which is uses phylogenetic trees as a basis
for probe design, but despite extensive searching, I can no longer find
it. The URL quoted in the paper is no longer current.<br>
<br>
thanks very much for any help<br>
<br>
Mike Cox<br>
<br>
--------------------------------<br>
Postdoctoral Research Associate<br>
Division of Genomics and Molecular Microbiology<br>
School of Biological Sciences<br>
University of Liverpool<br>
Crown Street<br>
Liverpool<br>
L69 7ZB<br>
<br>
Office 0151 7954576<br>
Lab 0151 7954580<br>
<br>
<br>
</span></font><o:p></o:p></p>
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