[Bio-linux-dev] BL-6 Galaxy history export error

[Wagstaff, Simon]

Hi Tim,
I'm running a local installation of Galaxy on BL-6. On the 'analyze data' page, when I go to the history pane and drop down the options menu to 'export to file' I get the error pasted below:
This doesn't happen with all histories - this particular one is a large RNASeq workflow (100+ steps).

I can't see this error on the Galaxy so I've reported it here in the first instance in case it's a packaging issue.

With Thanks,

Simon
Error Traceback:
View as:   Interactive<http://localhost:8080/history/export_archive>  |  Text<http://localhost:8080/history/export_archive>  |  XML<http://localhost:8080/history/export_archive> (full)<http://localhost:8080/history/export_archive>
⇝ AttributeError: 'NoneType' object has no attribute 'hid'
URL: http://localhost:8080/history/export_archive
Module weberror.evalexception.middleware:364 in respond        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> app_iter = self.application(environ, detect_start_response)
Module paste.debug.prints:98 in __call__        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> environ, self.app)
Module paste.wsgilib:539 in intercept_output        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> return self.application(environ, start_response)
Module galaxy.web.framework.base:160 in __call__        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> body = method( trans, **kwargs )
Module galaxy.web.controllers.history:679 in export_archive        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
Module galaxy.tools:1661 in execute        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions.history_imp_exp:108 in execute        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> include_deleted=incoming[ 'include_deleted' ] )
Module galaxy.tools.imp_exp:419 in setup_job        <http://localhost:8080/history/export_archive>  view<http://localhost:8080/history/export_archive>
>>  <http://localhost:8080/history/export_archive> input_datasets = [ assoc.dataset.hid for assoc in job.input_datasets ]
AttributeError: 'NoneType' object has no attribute 'hid'


*****************************************
Dr. Simon Wagstaff
Liverpool School of Tropical Medicine
Pembroke Place
Liverpool
L3 5QA UK
Tel: +44-151-705-3164
Fax: +44-151-705-3371
email: simonw at liv.ac.uk<mailto:simonw at liv.ac.uk>
http://venoms.liv.ac.uk<http://venoms.liv.ac.uk/>
*****************************************

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