[Bio-linux-dev] Upgrade to Bio-Linux 7 (at last)

Tony Travis tony.travis at ed.ac.uk
Wed Sep 26 12:45:52 EDT 2012


On 26/09/12 17:01, Tony Travis wrote:
> On 26/09/12 16:54, Daniel Pass wrote:
>> Cheers Tim, I'll give this a whirl on my laptop this evening.
>>
>> For what it's worth, after a couple of hours of hating Unity, I began to
>> like it and I agree with keeping up with the core ubuntu. It's like when
>> everyone freaks out when they change facebook.
>
> Hi, Dan.
>
> I second that - I upgraded Bio-Linux 6 on my laptop to Ubuntu 12.04 LTS
> using the Ubuntu upgrade process. All working fine now, but I'll also
> run Tim's script on a vanilla Ubuntu 12.04 LTS server that we've just
> installed. Won't try it on my laptop until I've backed it up ;-)

Hi, Tim.

I've just tried your script on a minimal 12.04 LTS server install and 
everything went well until it tried installing Qiime. Did you try the 
changes that I suggested before to install Qiime under Bio-Linux?

I'll look into it and see if I can come up with a fix.

HTH,

   Tony.

> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
>
> The following packages have unmet dependencies.
>  bio-linux-qiime : Depends: qiime (>= 1.3.0) but it is not going to be installed
> E: Unable to correct problems, you have held broken packages.
> Not all packages installed properly - exiting.




More information about the Bio-linux-devel mailing list