[Bio-Linux] please update tophat version

[Tim Booth]

Hi Jeremy,

I've pushed the update through for Tophat so it should become available
later today.

Note that bowtie is a legacy program that is unlikely to be updated
again.  The latest bowtie2 is packaged separately in the bowtie2 package
(currently 2.1.0).

Cheers,

TIM

On Tue, 2013-08-27 at 06:44 +0100, Jeremy Shearman wrote:
> Hi Tim 
>              Can you please update the bio-linux tophat version to
> v2.0.9 because the current bio-linux version (2.0.8) is not compatible
> with the current bio-linux version of bowtie (v1.0.0) and throws an
> error when you try and run tophat.
> 
> Thanks
> Jeremy
> 
> Jeremy Shearman, PhD
> เจเรอมี่เชียร์แมน
> National Centre for Genetic Engineering and Biotechnology, NSTDA
> 113 Thailand Science Park, Phahonyothin Road, Klong1, Klong Luang,
> Pathumthani 12120
> Ph: +66 2564 6700 ext. 3234       fax: +66 2564 6584
>  
> ReasearcherID: F-1618-2010
> http://www.researcherid.com/rid/F-1618-2010

-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
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