[Bio-Linux] Installing Bio-Linux 7 over Ubuntu 12.10

[Anthony Pemberton]

Jeremy,

The dependency problems probably arise from the fact that the BL7 programs (the debs) are designed to run on Ubuntu 12.04 - the LTS version. Try installing that version, then follow the instructions. I was able to do this (also with Mint Maya (13)),

Regards,

Tony P.


From: bio-linux-bounces at nebclists.nerc.ac.uk [mailto:bio-linux-bounces at nebclists.nerc.ac.uk] On Behalf Of Martinson, Jeremy James
Sent: 12 March 2013 14:39
To: Bio Linux NEBC
Subject: [Bio-Linux] Installing Bio-Linux 7 over Ubuntu 12.10

Hi

Is there a preferred method for installing the BL7 programs on top of an existing Ubuntu installation? I have a workstation in my lab, and the Bio-Linux install DVD simply will not boot on it, no matter what I try. I can boot it from a standard Ubuntu 12.10 DVD though, and I've installed that instead, so now I'm trying to get BL7 up and running. I'm following the instructions on http://nebc.nerc.ac.uk/tools/bio-linux/other-bl-docs/package-repository but I'm running into a few dependency issues. Also, I notice that there are several packages that are present in both the bio-linux and Launchpad repositories (for example, emboss, paml, and qiime) - which one takes precedence? Any pointers would be much appreciated.

best regards

Jeremy

--
Dr. Jeremy Martinson
University of Pittsburgh
(412) 624-5646
jmartins at pitt.edu<mailto:jmartins at pitt.edu>


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bio-linux-list/attachments/20130312/9b6ba93c/attachment.html>