[Bio-Linux] Bowtie 2 and Galaxy

[Mallon, Eamonn B. (Dr.)]

Brilliant Thanks Tim

Dr Eamonn Mallon
Lecturer in Evolutionary Biology
Adrian 220
Biology Department
University of Leicester

http://www2.le.ac.uk/departments/biology/people/mallon





On 08/05/2013 10:50, "Tim Booth" <tbooth at ceh.ac.uk> wrote:

>Yes, that explains it.  I've pushed the new package onto Launchpad and
>the update should appear in the update manager for you within the next
>hour or so.
>
>https://launchpad.net/~nebc/+archive/bio-linux/+build/4559662
>
>Cheers,
>
>TIM
>
>On Wed, 2013-05-08 at 09:56 +0100, Mallon, Eamonn B. (Dr.) wrote:
>> I found this on the top hat webpage
>> 
>> 
>>           TopHat 2.0.8 release 2/26/2013
>>           Note (4/12/2013): patched version 2.0.8b was released in
>>order to
>> provide compatibility with Bowtie v1.0.0
>>            Version 2.0.8 is a quick fix release addressing the
>>following issues:
>> 
>> 
>> *  This version correctly handles the newest version of Bowtie2 v2.1.0.
>> 
>> 
>> *  The segment mapping slow-down introduced by some Bowtie2 parameter
>> changes in version 2.0.7 is now corrected.
>> 
>
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