[Bio-Linux] System on Parallels broken after updates

Tauqeer Alam tauqeer9 at gmail.com
Tue May 21 13:28:13 EDT 2013


Here it is-

sumiti at ubuntu:~$ dpkg -l '*libgl1*'

Desired=Unknown/Install/Remove/Purge/Hold
|
Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
||/ Name                     Version                  Description
+++-========================-========================-================================================================
un  libgl1                   <none>                   (no description
available)
ii  libgl1-mesa-dev          8.0.4-0ubuntu0.5         free implementation
of the OpenGL API -- GLX development files
un  libgl1-mesa-dev-lts-quan <none>                   (no description
available)
un  libgl1-mesa-dev-lts-rari <none>                   (no description
available)
ii  libgl1-mesa-dri          8.0.4-0ubuntu0.5         free implementation
of the OpenGL API -- DRI modules
un  libgl1-mesa-dri-dev      <none>                   (no description
available)
un  libgl1-mesa-dri-experime <none>                   (no description
available)
ii  libgl1-mesa-glx          8.0.4-0ubuntu0.5         free implementation
of the OpenGL API -- GLX runtime
un  libgl1-mesa-glx-lts-quan <none>                   (no description
available)
un  libgl1-mesa-glx-lts-rari <none>                   (no description
available)
un  libgl1-mesa-glx-no-multi <none>                   (no description
available)
un  libgl1-mesa-swx11-dev    <none>                   (no description
available)
un  libgl1-nvidia-alternativ <none>                   (no description
available)

sumiti at ubuntu:~$ sudo apt-get install --reinstall libgl1-mesa-glx

sudo] password for sumiti:

Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer
required:
  sbsigntool linux-headers-3.2.0-39-generic linux-headers-3.2.0-37
linux-headers-3.2.0-39
  linux-headers-3.2.0-37-generic language-pack-kde-en kde-l10n-engb
language-pack-kde-en-base
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 2 reinstalled, 0 to remove and 0 not
upgraded.
Need to get 0 B/207 kB of archives.
After this operation, 0 B of additional disk space will be used.
Do you want to continue [Y/n]? Y
(Reading database ... 495926 files and directories currently installed.)
Preparing to replace libgl1-mesa-glx 8.0.4-0ubuntu0.5 (using
.../libgl1-mesa-glx_8.0.4-0ubuntu0.5_amd64.deb) ...
Unpacking replacement libgl1-mesa-glx ...
Preparing to replace libgl1-mesa-glx:i386 8.0.4-0ubuntu0.5 (using
.../libgl1-mesa-glx_8.0.4-0ubuntu0.5_i386.deb) ...
Unpacking replacement libgl1-mesa-glx:i386 ...
Setting up libgl1-mesa-glx (8.0.4-0ubuntu0.5) ...
Setting up libgl1-mesa-glx:i386 (8.0.4-0ubuntu0.5) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
sumiti at ubuntu:~$


Awesome!!!! Everything is back.

THANK YOU VERY MUCH.  BioLinux ROCKS!!

Tauqeer



On Tue, May 21, 2013 at 1:11 PM, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi,
>
> > compiz (core) - Error: Couldn't load plugin
> > '/usr/lib/compiz/libopengl.so' : libGL.so.1: cannot open shared object
> > file: No such file or directory
>
> OK, I don't know why this has happened on your system but the error
> above appears to be the root cause.  The libGL.so.1 is a shared library
> file needed by the Unity desktop.  On my machine it's found at:
>
> /usr/lib/x86_64-linux-gnu/mesa/libGL.so.1
>
> And is owned by the package libgl1-mesa-glx (as revealed by dpkg -S).
> Could you please do:
>
> dpkg -l '*libgl1*'
>
> I get a report like the one below.  All the "un" lines are virtual
> packages and are not relevant.  Does libgl1-mesa-glx show up as being
> installed on your system?  What if you try to install/reinstall it?
>
> sudo apt-get install --reinstall libgl1-mesa-glx
>
> Does that put the file back?
>
> Cheers,
>
> TIM
>
> Desired=Unknown/Install/Remove/Purge/Hold
> |
> Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
> |/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
> ||/ Name                     Version                  Description
>
> +++-========================-========================-================================================================
> un  libgl1                   <none>                   (no description
> available)
> ii  libgl1-mesa-dev          8.0.4-0ubuntu0.5         free implementation
> of the OpenGL API -- GLX development files
> un  libgl1-mesa-dev-lts-quan <none>                   (no description
> available)
> un  libgl1-mesa-dev-lts-rari <none>                   (no description
> available)
> ii  libgl1-mesa-dri          8.0.4-0ubuntu0.5         free implementation
> of the OpenGL API -- DRI modules
> un  libgl1-mesa-dri-dev      <none>                   (no description
> available)
> un  libgl1-mesa-dri-experime <none>                   (no description
> available)
> ii  libgl1-mesa-glx          8.0.4-0ubuntu0.5         free implementation
> of the OpenGL API -- GLX runtime
> un  libgl1-mesa-glx-lts-quan <none>                   (no description
> available)
> un  libgl1-mesa-glx-lts-rari <none>                   (no description
> available)
> un  libgl1-mesa-glx-no-multi <none>                   (no description
> available)
> un  libgl1-mesa-swx11-dev    <none>                   (no description
> available)
> un  libgl1-nvidia-alternativ <none>                   (no description
> available)
> _______________________________________________
> Bio-Linux mailing list
> Bio-Linux at nebclists.nerc.ac.uk
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>



-- 
*********************************************
Md Tauqeer Alam, Ph.D
Division of Infectious Diseases
Emory University School of Medicine
615 Michael Street, Atlanta, GA 30322, USA
tauqeer9 at gmail.com
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