[Bio-Linux] Qiime 1.9 dependencies problem

[Tim Booth]

Hi Tarcisio,

Thanks for the bug report.  The package is on the C2D4U PPA which is
activated by default on Bio-Linux machines which is why I didn't spot
this problem before.

I've copied the package over to the Bio-Linux PPA, so this problem
should now be fixed, and you should be able to use QIIME without any
further changes to your APT sources configuration.  Is it working for
you now?

Cheers,

TIM

On Thu, 2015-04-09 at 11:13 +0100, Tarcisio Fedrizzi wrote:
> Hello,
> 
> I write you because I have a problem with the dependencies of qiime.
> 
> I'm using ubuntu server 14.04 lts and I've added the repos for
> biolinux 8:
> 
> deb http://nebc.nerc.ac.uk/bio-linux/ unstable bio-linux deb
> http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main
> deb-src http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main
> 
> 
> The problem with qiime 1.9 is that the package r-cran-optparse is
> included neither in ubuntu nor in biolinux. I report this especially
> because the trusty release is an LTS and maybe there are other users
> that want to keep this release of ubuntu.
> 
> 
> Thank you very much.
> 
> Best regards,
> 
> Tarcisio Fedrizzi.
> 

-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
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OX10 8BB 

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