[Bio-Linux] QIIME 1.9 biom cmd issue

[Andor J Kiss]

will do - thanks!
-- 
__________________________________________________________________
Andor J Kiss, Supervisor
Center for Bioinformatics and Functional Genomics
086 Pearson Hall ~ Miami University
700 East High Street
Oxford, Ohio  45056
USA

eMAIL: kissaj at MiamiOH.edu 
Telephone: +1 (513) 529-4280
Fax: +1 (513) 529-2431
URL (CBFG): http://www.cas.miamioh.edu/cbfg/  
URL (CBFG Services):
https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics
URL (Research): http://openwetware.org/wiki/User:Andor_J_Kiss 


On Wed, 2015-04-22 at 17:53 +0100, Tim Booth wrote:

> Hi Andor,
> 
> Looks like I neglected to update the "pyqi" library when I updated
> QIIME.  I've now pushed an updated package and the obvious error message
> is gone.  Could you please see if that fixes it for you?
> 
> Cheers,
> 
> TIM
> 
> On Tue, 2015-04-21 at 19:47 +0100, Andor J Kiss wrote:
> > Hi,
> > 
> >     Trying to run the command biom summarize-table and I'm getting an
> > error:
> > 
> > biom
> > [ 2:47PM]
> > usage: biom <command> [<args>]
> > 
> > The currently available commands are:
> >    add-metadata        Add metadata to a BIOM table
> >    convert             Convert to/from the BIOM table format
> >    normalize-table     Normalize a BIOM table
> >    show-install-info   Provide information about the biom-format
> > installation
> >    subset-table        Subset a BIOM table
> >    validate-table      Validate a BIOM-formatted file
> > 
> > The following commands could not be loaded:
> >    summarize-table     Error: cannot import name
> > write_or_print_list_of_strings
> > 
> > Any ideas on how to fix?
> > 
> > Thanks,
> > 
> > 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bio-linux-list/attachments/20150422/220be670/attachment.html>