[Bio-Linux] Rapidir R-cran package

[Pau Marc Muñoz Torres]

Thanks

P
El 19/06/2015 13:19, "Tim Booth" <tbooth at ceh.ac.uk> escribió:

> Hi Pau Marc,
>
> On Bio-Linux 8 you can install all packages from the big auto-generated
> C2D4U repository via apt-get, so for example you can do:
>
> apt-get install r-bioc-genomicalignments
>
> However, RAPIDR is missing, so for now you have to install it via
> install.packages() and update it manually as Tony suggested.
>
> I'll look into adding a package for this myself.  Its normally very easy
> to do.
>
> Cheers,
>
> TIM
>
> On Fri, 2015-06-19 at 11:41 +0100, Tony Travis wrote:
> > On 19/06/15 11:04, Pau Marc Muñoz Torres wrote:
> > > Hello9 everybody.
> > >
> > >  I'm, interested to install R-cran package on my system, nevertheless i
> > > do not find it at repositories neither in bioconductor
> > >
> > > i look at R-cram web page for Rapidir , and i have not found any linux
> > > binary.
> > >
> > > http://cran.r-project.org/web/packages/RAPIDR/index.html
> > >
> > > Can some one told me if it is possible to install it in  biolinux?
> >
> > Hi, Pau Marc.
> >
> > The CRAN package "RAPIDR" requires a BioConductor package
> > "GenomicAlignments", which must be installed first. See:
> >
> > > http://cran.r-project.org/web/packages/RAPIDR/index.html
> > >
> http://www.bioconductor.org/packages/release/bioc/manuals/GenomicAlignments/man/GenomicAlignments.pdf
> >
> > This is how to install and load "RAPIDR" in Bio-Linux 8:
> >
> >   R
> >   source("http://bioconductor.org/biocLite.R")
> >   biocLite("GenomicAlignments")
> >   install.packages("RAPIDR")
> >   library(RAPIDR)
> >
> > HTH,
> >
> >   Tony.
> >
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
> _______________________________________________
> Bio-Linux mailing list
> Bio-Linux at nebclists.nerc.ac.uk
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bio-linux-list/attachments/20150619/c36d0052/attachment.html>