[Bio-Linux] Bio-Linux Digest, Vol 78, Issue 2
Parham Pourbozorgi
papo0009 at gapps.umu.se
Tue Mar 3 07:41:09 EST 2015
Hi Tim,
No worries thanks any way.
I tried the commands and here is the output again:
sudo mount -t vmhgfs .host:/ /mnt/shared
Error: cannot mount filesystem: No such device
I assumed vmware-config-tools.pl should be ran with default values. It
seems it's not working with VMware. I don't have any problem with
VirtualBox. I just prefer VM because it runs biolinux faster than
VirtualBox. At least a year ago that was my experience so then I switched
to VM. I must add that several places I read that VM has removed this
shared folder option from newer version. Could that be the reason?
Cheers,
Parham
Kind regards,
Parham Pourbozorogi
PhD student,
Dept. of medical biochemistry and biophysics,
Umeå Unviersity,
Umeå - Sweden
On Tue, Mar 3, 2015 at 1:00 PM, <bio-linux-request at nebclists.nerc.ac.uk>
wrote:
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> Today's Topics:
>
> 1. Re: Bio-Linux Digest, Vol 78, Issue 1 (Parham Pourbozorgi)
> 2. VMWare player shared folders (Tim Booth)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 2 Mar 2015 15:43:45 +0100
> From: Parham Pourbozorgi <papo0009 at gapps.umu.se>
> To: bio-linux at nebclists.nerc.ac.uk
> Subject: Re: [Bio-Linux] Bio-Linux Digest, Vol 78, Issue 1
> Message-ID:
> <
> CAHhAhSjuPFw54R8YMY+jVCZim7aVkFXL41-mj1fjEoUDq+PUsg at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi,
> Thanks for looking into it. I tried the steps, it seems there is no vboxsf
> available. This is the output:
> sudo usermod -aG vboxsf $USER
> usermod: group 'vboxsf' does not exist
>
> I must add that I installed VMware's tools with default values, in case
> they had to be changed.
>
> Cheers,
> Parham
>
> Kind regards,
> Parham Pourbozorogi
>
> PhD student,
> Dept. of medical biochemistry and biophysics,
> Ume? Unviersity,
> Ume? - Sweden
>
> On Mon, Mar 2, 2015 at 1:00 PM, <bio-linux-request at nebclists.nerc.ac.uk>
> wrote:
>
> > Send Bio-Linux mailing list submissions to
> > bio-linux at nebclists.nerc.ac.uk
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> > or, via email, send a message with subject or body 'help' to
> > bio-linux-request at nebclists.nerc.ac.uk
> >
> > You can reach the person managing the list at
> > bio-linux-owner at nebclists.nerc.ac.uk
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of Bio-Linux digest..."
> >
> >
> > Today's Topics:
> >
> > 1. Re: shared folders disappeared after update (Tim Booth)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Mon, 2 Mar 2015 10:21:46 +0000
> > From: Tim Booth <tbooth at ceh.ac.uk>
> > To: Bio-Linux help and discussion <bio-linux at nebclists.nerc.ac.uk>
> > Cc: Parham Pourbozorgi <papo0009 at gapps.umu.se>
> > Subject: Re: [Bio-Linux] shared folders disappeared after update
> > Message-ID:
> > <1425291706.29012.142.camel at wllt1771.nerc-wallingford.ac.uk>
> > Content-Type: text/plain; charset="UTF-8"
> >
> > Hi Parham,
> >
> > Sorry to hear about this. Let's check things through one step at a
> > time, though I'm sure you've done most of this already:
> >
> > 1) In the VM, check that all updates applied successfully. You can do
> > this in the terminal like so:
> >
> > sudo apt-get update
> > sudo apt-get dist-upgrade
> >
> > You should see 0 to install and 0 errors.
> >
> > 2) Type 'groups' and see if the list includes the word 'vboxsf'. If
> > not, run:
> >
> > sudo usermod -aG vboxsf $USER
> >
> > 3) Shut down the VM
> >
> > 4) In the shared folder settings in the VM, remove the shared folder
> > definition and recreate it from scratch with the options 'auto-mount'
> > and 'make permanent' selected.
> >
> > 5) Boot up the VM
> >
> > 6) In the VM, open up a terminal and give the command:
> >
> > sudo VBoxControl --nologo sharedfolder list
> >
> > What do you see?
> >
> > 7) Also, give the command:
> >
> > ls -l /media
> >
> > Again, what do you see?
> >
> > Cheers,
> >
> > TIM
> >
> > On Fri, 2015-02-27 at 22:00 +0000, Parham Pourbozorgi wrote:
> > > Hello all,
> > > I have been using biolinux 8 on VMware player 7.1.0 build-2496824.
> > > Yesterday after a biolinux (or may be Ubuntu) update the shared
> > > folders between VMware and my host (Windows 8.1) disappeared and no
> > > matter how many of the online tips I tried and how many times I
> > > re-installed the biolinux I couldn't figure out a solution. I was
> > > wondering if you know the cause and you can give any advise.
> > >
> > >
> > > I must add that biolinux is a fantastic job and I really appreciate
> > > the effort, thanks!
> > >
> > >
> > >
> > > Cheers,
> > > Parham
> >
> > --
> > Tim Booth <tbooth at ceh.ac.uk>
> > NERC Environmental Bioinformatics Centre
> >
> > Centre for Ecology and Hydrology
> > Maclean Bldg, Benson Lane
> > Crowmarsh Gifford
> > Wallingford, England
> > OX10 8BB
> >
> > http://environmentalomics.org/bio-linux
> > +44 1491 69 2297
> >
> >
> >
> > ------------------------------
> >
> > Subject: Digest Footer
> >
> > _______________________________________________
> > Bio-Linux mailing list
> > Bio-Linux at nebclists.nerc.ac.uk
> > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> >
> >
> > ------------------------------
> >
> > End of Bio-Linux Digest, Vol 78, Issue 1
> > ****************************************
> >
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> ------------------------------
>
> Message: 2
> Date: Mon, 2 Mar 2015 16:46:53 +0000
> From: Tim Booth <tbooth at ceh.ac.uk>
> To: Bio-Linux help and discussion <bio-linux at nebclists.nerc.ac.uk>
> Subject: [Bio-Linux] VMWare player shared folders
> Message-ID:
> <1425314813.29012.158.camel at wllt1771.nerc-wallingford.ac.uk>
> Content-Type: text/plain; charset="UTF-8"
>
> Hi Parham,
>
> I do apologise - I didn't read your e-mail properly and sent
> instructions for VirtualBox rather than VMWare. You can ignore the
> vboxsf stuff.
>
> Given you already installed the VMWare drivers, please try this:
>
> sudo apt-get install linux-headers-generic
>
> sudo vmware-config-tools.pl
>
> sudo mkdir -p /mnt/shared
>
> sudo mount -t vmhgfs .host:/ /mnt/shared
>
> ls /mnt/*
>
> Any joy? Or else what exact error messages do you get?
>
> Cheers,
>
> TIM
>
> On Mon, 2015-03-02 at 14:43 +0000, Parham Pourbozorgi wrote:
> > Hi,
> > Thanks for looking into it. I tried the steps, it seems there is no
> > vboxsf available. This is the output:
> > sudo usermod -aG vboxsf $USER
> > usermod: group 'vboxsf' does not exist
> >
> >
> > I must add that I installed VMware's tools with default values, in
> > case they had to be changed.
> >
> >
> > Cheers,
> > Parham
> >
> > Kind regards,
> > Parham Pourbozorogi
> >
> >
> > PhD student,
> > Dept. of medical biochemistry and biophysics,
> > Ume? Unviersity,
> > Ume? - Sweden
> >
> > On Mon, Mar 2, 2015 at 1:00 PM,
> > <bio-linux-request at nebclists.nerc.ac.uk> wrote:
> > Send Bio-Linux mailing list submissions to
> > bio-linux at nebclists.nerc.ac.uk
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> > or, via email, send a message with subject or body 'help' to
> > bio-linux-request at nebclists.nerc.ac.uk
> >
> > You can reach the person managing the list at
> > bio-linux-owner at nebclists.nerc.ac.uk
> >
> > When replying, please edit your Subject line so it is more
> > specific
> > than "Re: Contents of Bio-Linux digest..."
> >
> >
> > Today's Topics:
> >
> > 1. Re: shared folders disappeared after update (Tim Booth)
> >
> >
> >
> ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Mon, 2 Mar 2015 10:21:46 +0000
> > From: Tim Booth <tbooth at ceh.ac.uk>
> > To: Bio-Linux help and discussion
> > <bio-linux at nebclists.nerc.ac.uk>
> > Cc: Parham Pourbozorgi <papo0009 at gapps.umu.se>
> > Subject: Re: [Bio-Linux] shared folders disappeared after
> > update
> > Message-ID:
> >
> > <1425291706.29012.142.camel at wllt1771.nerc-wallingford.ac.uk>
> > Content-Type: text/plain; charset="UTF-8"
> >
> > Hi Parham,
> >
> > Sorry to hear about this. Let's check things through one step
> > at a
> > time, though I'm sure you've done most of this already:
> >
> > 1) In the VM, check that all updates applied successfully.
> > You can do
> > this in the terminal like so:
> >
> > sudo apt-get update
> > sudo apt-get dist-upgrade
> >
> > You should see 0 to install and 0 errors.
> >
> > 2) Type 'groups' and see if the list includes the word
> > 'vboxsf'. If
> > not, run:
> >
> > sudo usermod -aG vboxsf $USER
> >
> > 3) Shut down the VM
> >
> > 4) In the shared folder settings in the VM, remove the shared
> > folder
> > definition and recreate it from scratch with the options
> > 'auto-mount'
> > and 'make permanent' selected.
> >
> > 5) Boot up the VM
> >
> > 6) In the VM, open up a terminal and give the command:
> >
> > sudo VBoxControl --nologo sharedfolder list
> >
> > What do you see?
> >
> > 7) Also, give the command:
> >
> > ls -l /media
> >
> > Again, what do you see?
> >
> > Cheers,
> >
> > TIM
> >
> > On Fri, 2015-02-27 at 22:00 +0000, Parham Pourbozorgi wrote:
> > > Hello all,
> > > I have been using biolinux 8 on VMware player 7.1.0
> > build-2496824.
> > > Yesterday after a biolinux (or may be Ubuntu) update the
> > shared
> > > folders between VMware and my host (Windows 8.1) disappeared
> > and no
> > > matter how many of the online tips I tried and how many
> > times I
> > > re-installed the biolinux I couldn't figure out a solution.
> > I was
> > > wondering if you know the cause and you can give any advise.
> > >
> > >
> > > I must add that biolinux is a fantastic job and I really
> > appreciate
> > > the effort, thanks!
> > >
> > >
> > >
> > > Cheers,
> > > Parham
> >
> > --
> > Tim Booth <tbooth at ceh.ac.uk>
> > NERC Environmental Bioinformatics Centre
> >
> > Centre for Ecology and Hydrology
> > Maclean Bldg, Benson Lane
> > Crowmarsh Gifford
> > Wallingford, England
> > OX10 8BB
> >
> > http://environmentalomics.org/bio-linux
> > +44 1491 69 2297
> >
> >
> >
> > ------------------------------
> >
> > Subject: Digest Footer
> >
> > _______________________________________________
> > Bio-Linux mailing list
> > Bio-Linux at nebclists.nerc.ac.uk
> > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> >
> >
> > ------------------------------
> >
> > End of Bio-Linux Digest, Vol 78, Issue 1
> > ****************************************
> >
> >
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
> NERC Environmental Bioinformatics Centre
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
>
> ------------------------------
>
> Subject: Digest Footer
>
> _______________________________________________
> Bio-Linux mailing list
> Bio-Linux at nebclists.nerc.ac.uk
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>
>
> ------------------------------
>
> End of Bio-Linux Digest, Vol 78, Issue 2
> ****************************************
>
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