[Bio-Linux] Bio-Linux Digest, Vol 78, Issue 17

Robert Tyx robtyx at yahoo.com
Mon Mar 30 07:25:18 EDT 2015 

Hi, 

In contrast to Mohendra, I have not been able to get BL8 to install successfully on a Dell R720. There's probably a way to get it to work (special drivers or something) but I don't know. It gets a kernel panic pretty quickly every time. For what it's worth, vanilla Ubuntu 14.04 LTS workstation does not install either, but the server version works fine. BL 7 works fine on this system also...

Sent from Yahoo Mail on Android

From:"bio-linux-request at nebclists.nerc.ac.uk" <bio-linux-request at nebclists.nerc.ac.uk>
Date:Mon, Mar 30, 2015 at 7:00 AM
Subject:Bio-Linux Digest, Vol 78, Issue 17

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Today's Topics:

  1. Re: Bio-Linux Digest, Vol 78, Issue 16 (Mahendra Modi)


----------------------------------------------------------------------

Message: 1
Date: Mon, 30 Mar 2015 16:08:04 +0530
From: Mahendra Modi <mkmodi at aau.ac.in>
To: bio-linux at nebclists.nerc.ac.uk
Subject: Re: [Bio-Linux] Bio-Linux Digest, Vol 78, Issue 16
Message-ID:
    <CAPUhUGx419u3XA2mC2R+LgaSKBDTkVBc9UiqBHvn=oxQTkhrUg at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

Hi,

We are running 3(three) servers with Bio-linux 8 and one of the me is a
Dell r520 with 2 8core Xeon processors and 128GiB RAM. Tony Travis from
Aberdeen University helped us in customisation of the servers. We use these
servers for NGS data analysis and Simulation studies using Gromacs.

Mahendra



On Sat, Mar 28, 2015 at 5:30 PM, <bio-linux-request at nebclists.nerc.ac.uk>
wrote:

> Send Bio-Linux mailing list submissions to
>        bio-linux at nebclists.nerc.ac.uk
>
> To subscribe or unsubscribe via the World Wide Web, visit
>        http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> or, via email, send a message with subject or body 'help' to
>        bio-linux-request at nebclists.nerc.ac.uk
>
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>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Bio-Linux digest..."
>
>
> Today's Topics:
>
>    1. is it possible to install biolinux on a dell server with 64Gb
>      RAM and 16 cores? (Stefano Campanaro)
>    2. Re: is it possible to install biolinux on a dell server with
>      64Gb RAM and 16 cores? (Tony Travis)
>    3. Re: is it possible to install biolinux on a dell server with
>      64Gb RAM and 16 cores? (Sharma, M D)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 27 Mar 2015 17:54:58 +0100
> From: Stefano Campanaro <stefano.campanaro at gmail.com>
> To: bio-linux at nebclists.nerc.ac.uk
> Subject: [Bio-Linux] is it possible to install biolinux on a dell
>        server with 64Gb RAM and 16 cores?
> Message-ID:
>        <
> CAKN-0dNHyetvgYd19MOqVeuZazWQ_Z1Q5M1z73Av-L-C7S+4fQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi,
> I would install biolinux on a recently acquired DELL server with 64Gb RAM
> and 16 cores. I would have some suggestions from users that are using bio
> linux on servers with similar characteristics.
> Thank you
> Sincerely
> --
> Stefano
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>
> Message: 2
> Date: Fri, 27 Mar 2015 17:19:43 +0000
> From: Tony Travis <tony.travis at minke-informatics.co.uk>
> To: <bio-linux at nebclists.nerc.ac.uk>
> Subject: Re: [Bio-Linux] is it possible to install biolinux on a dell
>        server with 64Gb RAM and 16 cores?
> Message-ID: <5515912F.2030803 at minke-informatics.co.uk>
> Content-Type: text/plain; charset="windows-1252"
>
> On 27/03/15 16:54, Stefano Campanaro wrote:
> > Hi,
> > I would install biolinux on a recently acquired DELL server with 64Gb
> > RAM and 16 cores. I would have some suggestions from users that are
> > using bio linux on servers with similar characteristics.
>
> Hi, Stefano.
>
> I'm running Bio-Linux 8 on three Tyan S8230-based servers with dual
> 8-core Opteron 6128 CPU's and 128GiB RAM in each at the University of
> Aberdeen. I installed Bio-Linux onto a partitionable RAID6, but boot
> from a RAID1 because GRUB can't boot from a degraded RAID6 - OK to boot
> from RAID6 if it's not degraded.
>
> I've also set up Bio-Linux terminal servers many times in the past, for
> example at the Wellcome Trust Centre for Cell Biology in Edinburgh, and
> I helped my friends at Assam Agricultural University set up Bio-Linux 8
> servers there for a training course we held recently.
>
> Bio-Linux 8 works very well as an "x2go" or SSH terminal server, thanks
> to the efforts that Tim and his team at EOS have put into Bio-Linux 8.
>
> I've got 10 at SATA2 drives in each of our three Bio-Linux servers here:
>
> 6 at 2TB:
>        RAID1 /boot
>        RAID6 /, swap, /usr/local, /home, work
>
> 2 at 4TB:
>        JBOD /backup1
>        JBOD /backup2
>
> 2 at 4TB:
>        JBOD /archive
>        JBOD /scratch
>
> Let me know if there is anything I can do to help?
>
> If you boot your server from a Bio-Linux USB-stick and let me in through
> your firewall I can install it for you remotely. I've done this several
> times already for disaster recovery on an EU FP-6 project.
>
>  Tony.
>
> --
> Minke Informatics Limited, Registered in Scotland - Company No. SC419028
> Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK)
> tel. +44(0)19755 63548                    http://minke-informatics.co.uk
> mob. +44(0)7985 078324        mailto:tony.travis at minke-informatics.co.uk
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 27 Mar 2015 17:17:56 +0000
> From: "Sharma, M D" <M.D.Sharma at exeter.ac.uk>
> To: Stefano Campanaro <stefano.campanaro at gmail.com>, "Bio-Linux help
>        and discussion" <bio-linux at nebclists.nerc.ac.uk>,
>        "bio-linux at nebclists.nerc.ac.uk" <bio-linux at nebclists.nerc.ac.uk>
> Subject: Re: [Bio-Linux] is it possible to install biolinux on a dell
>        server with 64Gb RAM and 16 cores?
> Message-ID: <vackbrvwh29b5de7j29erggg.1427476673744 at email.android.com>
> Content-Type: text/plain; charset="us-ascii"
>
> Absolutely... I have it as you described and also with 64 cores and 512 GB
> of RAM..
>
> Sent from my HTC
>
> On 27 Mar 2015 16:55, Stefano Campanaro <stefano.campanaro at gmail.com>
> wrote:
> Hi,
> I would install biolinux on a recently acquired DELL server with 64Gb RAM
> and 16 cores. I would have some suggestions from users that are using bio
> linux on servers with similar characteristics.
> Thank you
> Sincerely
> --
> Stefano
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>
> End of Bio-Linux Digest, Vol 78, Issue 16
> *****************************************
>



-- 
________________________
Prof. Mahendra K Modi
Head, Agril Biotechnology & Coordinator, DIC
Assam Agricultural University
Jorhat 785013, India
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